这个工具出手就是CNS级水准！师妹师弟都在偷偷用！

pythonic生物人2026年05月19日约 2 分钟

分享一个强大的R工具—ggNetView，它提供灵活且符合publication-ready标准的工具，专门用于network分析与可视化，少量代码完成复杂任务。

使用一下ggNetView

link_heatmaps

如果感觉之前分享的Mantel test相关性网络Heatmap不能满足要求0基础速通，这款顶刊人手一份的Mantel检验，

可以试试它，

gglink_heatmaps(
  env = Envdf_4st,
  spec = Spedf,
  env_select = list(Env01 = 1:14, 
                    Env02 = 15:28,
                    Env03 = 29:42,
                    Env04 = 43:56),
  spec_select = list(Spec01 = 1:8),
  relation_method = "correlation",
  spec_layout = "circle_outline",
  cor.method = "pearson",
  cor.use = "pairwise",
  r = 6,
  distance = 1,
  orientation = c("top_right", "bottom_right", "top_left", "bottom_left")
)

Basic network plot

ggNetView(
  graph_obj = obj,
  layout = "gephi",
  layout.module = "adjacent",
  group.by = "Modularity",
  fill.by = "Modularity",
  pointsize = c(1, 5),
  center = F,
  jitter = F,
  mapping_line = F,
  shrink = 0.9,
  linealpha = 0.2,
  linecolor = "#d9d9d9"
)

添加注释、配色等信息

ggNetView(
  graph_obj = obj,
  layout = "gephi",
  layout.module = "adjacent",
  group.by = "Modularity",
  fill.by = "Modularity",
  pointsize = c(1, 5),
  center = F,
  jitter = TRUE,
  jitter_sd = 0.15,
  mapping_line = TRUE,
  shrink = 0.9,
  linealpha = 0.2,
  linecolor = "#d9d9d9",
  add_outer = T,
  label = T,
  pointlabel = "top1"
)